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Hello,
This may be a problem outside the realm of scanpy functionality, but I thought it best to bring up in case it is relevant or in case anyone here has seen something before while trying to use scanpy. It looks like I can having trouble importing a dependency of the sc.pp.regress() function. I don't think the data here is relevant, just something in my set up. I tried updating all the libraries so that everything is up to date. This problem just started occurring today (2/10/21) and had no issue yesterday, so I figure it was a change on the scanpy end that I didn't keep up with proprely.
/broad/software/free/Linux/redhat_7_x86_64/pkgs/anaconda3_2020.07/lib/python3.8/site-packages/statsmodels/tsa/filters/filtertools.py in <module>
16 import scipy.fftpack as fft
17 from scipy import signal
---> 18 from scipy.signal.signaltools import _centered as trim_centered
19
20 from statsmodels.tools.validation import array_like, PandasWrapper
ImportError: cannot import name '_centered' from 'scipy.signal.signaltools' (/home/unix/jjeang/.local/lib/python3.8/site-packages/scipy/signal/signaltools.py)
Hello,
This may be a problem outside the realm of scanpy functionality, but I thought it best to bring up in case it is relevant or in case anyone here has seen something before while trying to use scanpy. It looks like I can having trouble importing a dependency of the sc.pp.regress() function. I don't think the data here is relevant, just something in my set up. I tried updating all the libraries so that everything is up to date. This problem just started occurring today (2/10/21) and had no issue yesterday, so I figure it was a change on the scanpy end that I didn't keep up with proprely.
yields the following error
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