HDF5 serialization format

scverse / scanpy

Single-cell analysis in Python. Scales to >1M cells.

https://scanpy.readthedocs.io

BSD 3-Clause "New" or "Revised" License

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HDF5 serialization format #28

Closed flying-sheep closed 6 years ago

flying-sheep commented 7 years ago

hi, we want to converge our HDF5 representation with SingleCellExperiment’s.

SummarizedExperiment already has a HDF5 repr

cc @davismcc @LTLA

jorvis commented 6 years ago

Link above is broken

flying-sheep commented 6 years ago

fixed, thanks. seems like Bioconductor has turned off the mirror, but put their packages in a github organization

falexwolf commented 6 years ago

Well, I guess the solutions via .loom and .h5ad are things that people started liking... both are investigated within the Human Cell Atlas and there will be a consensus solution at some point... No need to discuss this here anymore...