Open alexanderchang1 opened 2 months ago
Hi, I just wanted to follow up on this.
Hi, I don’t have much experience with that data. Does squidpy work better? https://squidpy.readthedocs.io/en/stable/api/squidpy.read.visium.html
scanpy doesn’t have much support for spatial analysis, squidpy is built for it.
Please make sure these conditions are met
What happened?
I'm trying to read in visium data with antibody capture data but for some reason the antibody capture data is not registering. Is there something I'm doing wrong? I couldn't find documentation on how to do this. Although I do see the antibody capture data in the web_summary.html
However read_10x_mtx method works directly on the folder, is there a way to add gex_only functionality to the read_visium function?
Minimal code sample
Error output
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