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scverse / scanpy

Single-cell analysis in Python. Scales to >1M cells.
https://scanpy.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Investigate SquidPy tools used in scRNAseq-only analyses #3137

Open flying-sheep opened 2 months ago

flying-sheep commented 2 months ago

What kind of feature would you like to request?

New analysis tool: A simple analysis tool you have been using and are missing in sc.tools?

Please describe your wishes

LigRec and so on

cc @Intron7

ilan-gold commented 1 month ago

Most interesting things would be (from Severin's conversations) would be autocorrelation (via NN graph).

Current workflow is to just use squidpy by it would be simple to add/port from squidpy.