Open MartaBenegas opened 2 months ago
Hi!
I was playing with the pbmc68k_reduced dataset and I saw that it has decimal values even in the "raw" matrix:
>>> adata.raw.X.data array([2.177, 2.177, 2.544, ..., 1.142, 2.255, 1.142], dtype=float32)
which transformation has been applied? shouldn't the "raw" group contain unprocessed counts? is there a standard for this? Ideally, I would like to know where to find the raw, unprocessed, counts everytime I see an anndata or h5ad file.
Hi!
I was playing with the pbmc68k_reduced dataset and I saw that it has decimal values even in the "raw" matrix:
which transformation has been applied? shouldn't the "raw" group contain unprocessed counts? is there a standard for this? Ideally, I would like to know where to find the raw, unprocessed, counts everytime I see an anndata or h5ad file.