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scverse / scanpy

Single-cell analysis in Python. Scales to >1M cells.
https://scanpy.readthedocs.io
BSD 3-Clause "New" or "Revised" License
1.88k stars 594 forks source link

Finish `scale`→`density_norm` deprecation #3244

Closed flying-sheep closed 1 week ago

flying-sheep commented 1 week ago

sc.pl.violin and sc.pl.stacked_violin were missed in #2844

codecov[bot] commented 1 week ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 76.77%. Comparing base (bd75839) to head (32279bf). Report is 2 commits behind head on main.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #3244 +/- ## ========================================== + Coverage 76.49% 76.77% +0.27% ========================================== Files 109 109 Lines 12544 12550 +6 ========================================== + Hits 9596 9635 +39 + Misses 2948 2915 -33 ``` | [Files with missing lines](https://app.codecov.io/gh/scverse/scanpy/pull/3244?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse) | Coverage Δ | | |---|---|---| | [src/scanpy/plotting/\_anndata.py](https://app.codecov.io/gh/scverse/scanpy/pull/3244?src=pr&el=tree&filepath=src%2Fscanpy%2Fplotting%2F_anndata.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9wbG90dGluZy9fYW5uZGF0YS5weQ==) | `85.02% <100.00%> (+0.03%)` | :arrow_up: | | [src/scanpy/plotting/\_stacked\_violin.py](https://app.codecov.io/gh/scverse/scanpy/pull/3244?src=pr&el=tree&filepath=src%2Fscanpy%2Fplotting%2F_stacked_violin.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9wbG90dGluZy9fc3RhY2tlZF92aW9saW4ucHk=) | `84.57% <100.00%> (ø)` | | | [src/scanpy/plotting/\_tools/\_\_init\_\_.py](https://app.codecov.io/gh/scverse/scanpy/pull/3244?src=pr&el=tree&filepath=src%2Fscanpy%2Fplotting%2F_tools%2F__init__.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9wbG90dGluZy9fdG9vbHMvX19pbml0X18ucHk=) | `77.60% <100.00%> (ø)` | | | [src/scanpy/plotting/\_utils.py](https://app.codecov.io/gh/scverse/scanpy/pull/3244?src=pr&el=tree&filepath=src%2Fscanpy%2Fplotting%2F_utils.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9wbG90dGluZy9fdXRpbHMucHk=) | `56.56% <100.00%> (+0.32%)` | :arrow_up: | ... and [2 files with indirect coverage changes](https://app.codecov.io/gh/scverse/scanpy/pull/3244/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse)