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scverse / scanpy

Single-cell analysis in Python. Scales to >1M cells.
https://scanpy.readthedocs.io
BSD 3-Clause "New" or "Revised" License
1.88k stars 594 forks source link

Implement sparse PCA using dask #3263

Open flying-sheep opened 4 days ago

flying-sheep commented 4 days ago
codecov[bot] commented 4 days ago

Codecov Report

Attention: Patch coverage is 98.93617% with 1 line in your changes missing coverage. Please review.

Project coverage is 77.10%. Comparing base (48706ca) to head (314bf4a).

Files with missing lines Patch % Lines
src/scanpy/preprocessing/_pca/_dask_sparse.py 98.70% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #3263 +/- ## ========================================== + Coverage 76.74% 77.10% +0.36% ========================================== Files 109 110 +1 Lines 12466 12553 +87 ========================================== + Hits 9567 9679 +112 + Misses 2899 2874 -25 ``` | [Flag](https://app.codecov.io/gh/scverse/scanpy/pull/3263/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse) | Coverage Δ | | |---|---|---| | [](https://app.codecov.io/gh/scverse/scanpy/pull/3263/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse) | `77.10% <98.93%> (+0.36%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files with missing lines](https://app.codecov.io/gh/scverse/scanpy/pull/3263?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse) | Coverage Δ | | |---|---|---| | [src/scanpy/preprocessing/\_pca/\_\_init\_\_.py](https://app.codecov.io/gh/scverse/scanpy/pull/3263?src=pr&el=tree&filepath=src%2Fscanpy%2Fpreprocessing%2F_pca%2F__init__.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9wcmVwcm9jZXNzaW5nL19wY2EvX19pbml0X18ucHk=) | `93.71% <100.00%> (ø)` | | | [src/scanpy/preprocessing/\_pca/\_dask\_sparse.py](https://app.codecov.io/gh/scverse/scanpy/pull/3263?src=pr&el=tree&filepath=src%2Fscanpy%2Fpreprocessing%2F_pca%2F_dask_sparse.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9wcmVwcm9jZXNzaW5nL19wY2EvX2Rhc2tfc3BhcnNlLnB5) | `98.70% <98.70%> (ø)` | | ... and [9 files with indirect coverage changes](https://app.codecov.io/gh/scverse/scanpy/pull/3263/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse)