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scverse / scanpy

Single-cell analysis in Python. Scales to >1M cells.
https://scanpy.readthedocs.io
BSD 3-Clause "New" or "Revised" License
1.93k stars 603 forks source link

Backport PR #3283 on branch 1.10.x (Remove 3.9 support) #3303

Closed flying-sheep closed 1 month ago

codecov[bot] commented 1 month ago

Codecov Report

Attention: Patch coverage is 87.50000% with 3 lines in your changes missing coverage. Please review.

Project coverage is 76.91%. Comparing base (388aae5) to head (81f4aa3). Report is 2 commits behind head on 1.10.x.

Files with missing lines Patch % Lines
src/scanpy/external/pl.py 0.00% 2 Missing :warning:
src/scanpy/plotting/_utils.py 83.33% 1 Missing :warning:
Additional details and impacted files ```diff @@ Coverage Diff @@ ## 1.10.x #3303 +/- ## ========================================== - Coverage 76.92% 76.91% -0.01% ========================================== Files 109 109 Lines 12456 12451 -5 ========================================== - Hits 9582 9577 -5 Misses 2874 2874 ``` | [Files with missing lines](https://app.codecov.io/gh/scverse/scanpy/pull/3303?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse) | Coverage Δ | | |---|---|---| | [src/scanpy/\_settings.py](https://app.codecov.io/gh/scverse/scanpy/pull/3303?src=pr&el=tree&filepath=src%2Fscanpy%2F_settings.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9fc2V0dGluZ3MucHk=) | `90.20% <ø> (ø)` | | | [src/scanpy/\_utils/\_\_init\_\_.py](https://app.codecov.io/gh/scverse/scanpy/pull/3303?src=pr&el=tree&filepath=src%2Fscanpy%2F_utils%2F__init__.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9fdXRpbHMvX19pbml0X18ucHk=) | `75.41% <100.00%> (ø)` | | | [src/scanpy/external/pp/\_bbknn.py](https://app.codecov.io/gh/scverse/scanpy/pull/3303?src=pr&el=tree&filepath=src%2Fscanpy%2Fexternal%2Fpp%2F_bbknn.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9leHRlcm5hbC9wcC9fYmJrbm4ucHk=) | `58.33% <ø> (ø)` | | | [src/scanpy/external/pp/\_magic.py](https://app.codecov.io/gh/scverse/scanpy/pull/3303?src=pr&el=tree&filepath=src%2Fscanpy%2Fexternal%2Fpp%2F_magic.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9leHRlcm5hbC9wcC9fbWFnaWMucHk=) | `86.48% <100.00%> (+0.37%)` | :arrow_up: | | [src/scanpy/external/tl/\_pypairs.py](https://app.codecov.io/gh/scverse/scanpy/pull/3303?src=pr&el=tree&filepath=src%2Fscanpy%2Fexternal%2Ftl%2F_pypairs.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9leHRlcm5hbC90bC9fcHlwYWlycy5weQ==) | `26.47% <ø> (ø)` | | | [src/scanpy/get/\_aggregated.py](https://app.codecov.io/gh/scverse/scanpy/pull/3303?src=pr&el=tree&filepath=src%2Fscanpy%2Fget%2F_aggregated.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9nZXQvX2FnZ3JlZ2F0ZWQucHk=) | `94.69% <ø> (ø)` | | | [src/scanpy/neighbors/\_\_init\_\_.py](https://app.codecov.io/gh/scverse/scanpy/pull/3303?src=pr&el=tree&filepath=src%2Fscanpy%2Fneighbors%2F__init__.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9uZWlnaGJvcnMvX19pbml0X18ucHk=) | `81.06% <100.00%> (ø)` | | | [src/scanpy/neighbors/\_types.py](https://app.codecov.io/gh/scverse/scanpy/pull/3303?src=pr&el=tree&filepath=src%2Fscanpy%2Fneighbors%2F_types.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9uZWlnaGJvcnMvX3R5cGVzLnB5) | `100.00% <100.00%> (ø)` | | | [src/scanpy/plotting/\_anndata.py](https://app.codecov.io/gh/scverse/scanpy/pull/3303?src=pr&el=tree&filepath=src%2Fscanpy%2Fplotting%2F_anndata.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9wbG90dGluZy9fYW5uZGF0YS5weQ==) | `85.44% <100.00%> (+0.01%)` | :arrow_up: | | [src/scanpy/plotting/\_baseplot\_class.py](https://app.codecov.io/gh/scverse/scanpy/pull/3303?src=pr&el=tree&filepath=src%2Fscanpy%2Fplotting%2F_baseplot_class.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NjYW5weS9wbG90dGluZy9fYmFzZXBsb3RfY2xhc3MucHk=) | `91.59% <ø> (ø)` | | | ... and [8 more](https://app.codecov.io/gh/scverse/scanpy/pull/3303?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse) | |