scverse / scanpy_usage

Scanpy use cases.
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Demo Nearest Neighbors and UMAP with CPU parallelization #17

Closed tomwhite closed 4 years ago

tomwhite commented 4 years ago

Note that this uses UMAP 0.4 (not yet released) and https://github.com/tomwhite/scanpy/tree/umap_embedding_optimization_0.4dev (can't be merged until Scanpy uses UMAP 0.4), but it is still a useful example and shouldn't prevent it from being merged.