antigen specificity prediction

[grst]

Description of feature

The first reasonable methods to predict antigen specificity emerge, e.g.

• ERGO-II (https://www.frontiersin.org/articles/10.3389/fimmu.2021.664514/full, https://github.com/IdoSpringer/ERGO-II)

These are conceptually different from querying databases through sequence distance metrics or autoencoders, as they do not simply model the sequence similarity, but explicitly model the specificity.

Would be nice to call them directly from scirpy.

@FFinotello, potentially another good student task.

[grst]

A new, interesting method: https://www.nature.com/articles/s43588-024-00653-0