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scverse / scverse-tutorials

Tutorials for learning scverse
https://scverse-tutorials.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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Update basic clustering tutorial to be in sync with scanpy 1.10 #153

Closed ivirshup closed 1 month ago

ivirshup commented 6 months ago

Scanpy now features a cut down version of the basic plotting tutorial hosted here, which shows all the steps that only rely on scanpy.

https://scanpy.readthedocs.io/en/stable/tutorials/basics/clustering.html

While updating this, I made some modification that take advantage of new scanpy features. We should update the version here to be in sync.

ilan-gold commented 3 months ago

Blocked by myst parser issue, slow response