New 10X Data

[PierreBoyeau]

For the DE task one of the idea, along with synthetic datasets is to use datasets such as this one https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/hgmm_5k_v3

This made me realize there was a quantity of datasets (all cell ranger 3.0.0) which were not included in the current pipeline. As a reminder, you can find the list of all datasets here

My guess is that they are new, but maybe there were knowingly ignored. Is there interest in adding these datasets to scVI?

I am currently working on extending the Dataset10X dataset to include them, so if you think we should add these datasets I'd gladly do a PR.

[PierreBoyeau]

And @jeff-regier @adamgayoso there are some scRNA/surface proteins datasets in these datasets. Are those the ones you mentionned last week?

https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/pbmc_1k_protein_v3 https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/pbmc_10k_protein_v3 https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/malt_10k_protein_v3

[jeff-regier]

I may have mentioned the two 10k-cell datasets before. Sure, adding them sounds good. I think they're different than what Adam was using.