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spatialdata-io
BSD 3-Clause "New" or "Revised" License
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Fix missing path in codex reader pd.read_csv call
#153
toniortiz
opened
3 days ago
1
merscope reader update
#152
quentinblampey
closed
4 days ago
2
Made Xenium table optional
#151
LucaMarconato
closed
4 days ago
0
Error to read in Baysor segmented Xenium data
#150
Bo-UT
opened
6 days ago
0
Support for `binned_ouputs` folder for Visium HD
#149
LucaMarconato
closed
4 days ago
0
update codecov
#148
giovp
closed
1 week ago
1
Wrong file loaded when building new SpatialData
#147
dawe
opened
2 weeks ago
2
Handle Situation where V1 Visium `tissue_positions_list.csv` Has a Header
#146
jeffquinn-msk
opened
2 weeks ago
0
Error when trying to import Visium HD data
#145
alexanderchang1
opened
2 weeks ago
2
Converting VisiumHD to .zarr
#144
RijndertAriese
closed
2 weeks ago
0
visium HD doesn't have "filtered" counts file but "slice_file"
#143
giovp
opened
3 weeks ago
0
Xenium test datasets
#142
LucaMarconato
closed
3 weeks ago
4
[pre-commit.ci] pre-commit autoupdate
#141
pre-commit-ci[bot]
closed
3 weeks ago
0
Cannot load VisiumHD data without image
#140
pakiessling
opened
1 month ago
0
Fixed path searching behavior in DBiT reader.
#139
lillux
closed
3 weeks ago
4
store probe set for image-based transcriptomics in spatialdata
#138
giovp
opened
1 month ago
3
CosMX reader with stitching
#137
quentinblampey
opened
1 month ago
0
Support reading multi-polygon selection files from the Xenium Explorer
#136
quentinblampey
closed
1 month ago
0
[pre-commit.ci] pre-commit autoupdate
#135
pre-commit-ci[bot]
closed
1 month ago
0
experimental.to_legacy_anndata fails when no global image is provided
#134
cavenel
closed
1 month ago
1
make obs names unique
#133
melonora
closed
1 month ago
5
error from minimalistic reading of xenium data
#132
EliHei2
closed
4 days ago
3
fix docs and tests
#131
LucaMarconato
closed
2 months ago
1
Visium HD support
#130
LucaMarconato
closed
2 months ago
0
Cannot open example data files with current spatialdata
#129
VolkerH
closed
1 month ago
10
Update release.yaml
#128
LucaMarconato
closed
2 months ago
0
[pre-commit.ci] pre-commit autoupdate
#127
pre-commit-ci[bot]
closed
2 months ago
1
Update test_and_deploy.yaml
#126
LucaMarconato
closed
2 months ago
2
Multi table
#125
melonora
closed
2 months ago
2
Wrong Visium radii?
#124
LucaMarconato
opened
2 months ago
1
Consider using nuclei locations for Xenium data when `cells_as_circles` is `True`
#123
LucaMarconato
opened
2 months ago
0
[pre-commit.ci] pre-commit autoupdate
#122
pre-commit-ci[bot]
closed
2 months ago
0
High RAM usage with the MERSCOPE reader
#121
quentinblampey
closed
4 days ago
3
[pre-commit.ci] pre-commit autoupdate
#120
pre-commit-ci[bot]
closed
2 months ago
0
fixed visium image shape parsing
#119
LucaMarconato
closed
2 months ago
1
Xenium: error `unhashable type: 'list'`
#118
EST09
closed
2 months ago
1
Empty color values in images after polygon_query from Xenium data
#117
Bo-UT
closed
2 months ago
11
Update mcmicro
#116
melonora
closed
3 months ago
0
Fixed inplace barcode coordinate sorting in dbit reader
#115
lillux
closed
3 months ago
0
Sorting in place causes misalignment of all data
#114
dawe
closed
3 months ago
1
Dbit reader - improved barcode checking behavior
#113
lillux
closed
3 months ago
2
Support for `cells.zarr.zip` for Xenium
#112
LucaMarconato
closed
2 months ago
3
Support for xenium analyzer 2.0.0
#111
LucaMarconato
closed
2 months ago
3
Support `cells.zarr.zip` for Xenium data
#110
LucaMarconato
closed
2 months ago
1
[pre-commit.ci] pre-commit autoupdate
#109
pre-commit-ci[bot]
closed
3 months ago
1
Links to third-party readers
#108
LucaMarconato
closed
3 months ago
1
visium supports raw reads
#107
LucaMarconato
closed
2 months ago
2
Read xenium explorer selection
#106
quentinblampey
closed
3 months ago
8
Read xenium explorer selection
#105
quentinblampey
closed
3 months ago
0
`spatialdata_io.visium` Drops Non-Tissue Spots
#104
jeffquinn-msk
closed
2 months ago
4
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