squidpy.utils are gone?

scverse / squidpy

Spatial Single Cell Analysis in Python

https://squidpy.readthedocs.io/en/stable/

BSD 3-Clause "New" or "Revised" License

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squidpy.utils are gone? #179

Closed hspitzer closed 3 years ago

hspitzer commented 3 years ago

in #172 @michalk8 removed squidpy.utils.py. Did the functions go somewhere else? I was using the read function to read in adata + image container.

michalk8 commented 3 years ago

@hspitzer Based on this, https://github.com/theislab/squidpy/pull/172#discussion_r533151557 I thought they could be removed (ping @giovp)

hspitzer commented 3 years ago

yeah, I would disagree for the read_visium_data function - which I found to be nice and it makes loading the data for example notebooks very short and concise.

giovp commented 3 years ago

omg my bad, sorry! totally missed that that function was also there. I could add the file again, do you need it @hspitzer ?

michalk8 commented 3 years ago

Closed via #182