search

scverse / squidpy

Spatial Single Cell Analysis in Python
https://squidpy.readthedocs.io/en/stable/
BSD 3-Clause "New" or "Revised" License
436 stars 79 forks source link

4i dataset #cells change #275

Closed michalk8 closed 3 years ago

michalk8 commented 3 years ago

Description

Error when loading the data. @giovp did you update it? If yes, did you update any more?

Minimal reproducible example

import squidpy as sq
adata = sq.datasets.four_i()

Traceback

```pytb ValueError Traceback (most recent call last) in ----> 1 adata = sq.datasets.four_i() ~/.miniconda3/envs/cellrank/lib/python3.8/site-packages/squidpy/datasets/_utils.py in four_i(path, **kwargs) ~/.miniconda3/envs/cellrank/lib/python3.8/site-packages/squidpy/datasets/_utils.py in download(self, fpath, **kwargs) 87 88 if self.shape is not None and data.shape != self.shape: ---> 89 raise ValueError(f"Expected the data to have shape `{self.shape}`, found `{data.shape}`.") 90 91 return data ValueError: Expected the data to have shape `(270876, 43)`, found `(270938, 43)`.```

Version

...

giovp commented 3 years ago

I did updated it yes I think, I'll fix it tomo, sorry ! I updated couple more but modified them I think

giovp commented 3 years ago

sorry, should have realized yesterday, but the latest version uploaded on fighsare is the correct one, and I think you have in cache the old one. If you download the latest should be good