Agenda 1-10

[giovp]

Points to be discussed

• images:
  • features?
• spatial graph:
  • Integrate cellphoneDb/omnipath to neighborhood enrichment to provide ligand receptor pair in a straighforward way (Giovanni)
  • Ripley function relies on Astropy: include it as rquirements or re-implement from scratch ?
  • Clustering with spatial coordinate: remove or adapt?
• plotting:
  • move outside of both graph and image?
• General:
  • Include other people?

[giovp]

Minutes:

• clean notebooks means make sure they work in master branch.
• test in the same fashion as scnpy
• import astropy in specific function only, and not add it as a requirements
• scrap join clustering of spatial and gene expression
• always open PR with respect to master, no more images and graph branch
• plotting in one place, so user don't have to think about graph or images plotting
• cell phone db interface could be a paper on its own, let's postpone this
• external people maybe for later
• for next meeting, all cleanup should be done, so we can move on on what to do in terms of roadmap and next features.
• we'll try to use github projects and features more!