Incorporate Monkeybread and CRAWDAD into Squidpy framework - Githubissues

scverse / squidpy

Spatial Single Cell Analysis in Python

https://squidpy.readthedocs.io/en/stable/

BSD 3-Clause "New" or "Revised" License

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Incorporate Monkeybread and CRAWDAD into Squidpy framework #760

Closed SNOL2 closed 9 months ago

SNOL2 commented 9 months ago

Hi, Thank you for developing and maintaining this wonderful tools! I was wondering if you can incorporate Monkeybread and CRAWDAD into Squidpy framework.

Monkeybread: for cellular neighborhoods analysis, https://www.biorxiv.org/content/10.1101/2023.09.14.557736v1.full

CRAWDAD: for co-occurence analysis, https://www.biorxiv.org/content/10.1101/2023.10.05.560733v1#:~:text=Spatially%20resolved%20omics%20technologies%20provide%20molecular%20profiling%20of,to%20quantify%20cell-type%20spatial%20relationships%20across%20length%20scales.

Thanks again!

giovp commented 9 months ago

hi, what do you mean by incorporate? I'm afraid we won't be reimplementing methods in squidpy, it might be useful to reach out to the developers of those tools directly.