Closed FrancescaDr closed 10 months ago
hi @FrancescaDr could you please rebase from main ? it should fix tests. Also could you remove the tests for the reader? after that we can merge it!
Merging #766 (6f48274) into main (c528ce7) will decrease coverage by
0.07%
. The diff coverage is0.00%
.
Description
fov
it checks if thefov
variables exists inCellCompositon
andCellLabels
, like has been done for metadata loading.uns
variables fromCellComposition
andCellLabels
(not all CosmX nano string data has the information available, e.i. bowel disease data does not haveCellLabels
information )How has this been tested?
Tested with two different patients from CosmX Lung (
test/test_nanostring.py
) and loading with data from CosmX bowel disease dataCloses
closes #585