Any existing effort to port squidpy functionalities to R?

scverse / squidpy

Spatial Single Cell Analysis in Python

https://squidpy.readthedocs.io/en/stable/

BSD 3-Clause "New" or "Revised" License

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Any existing effort to port squidpy functionalities to R? #787

Closed stemangiola closed 4 weeks ago

stemangiola commented 6 months ago

Hello All,

I was wondering if there is any effort to port some of the squidpy tools (e.g. segmentation) to R.

For example as Velociraptor R package does for scvelo.

My discourse post is here: https://discourse.scverse.org/t/any-existing-effort-to-port-squidpy-functionalities-to-r/1983

Thanks a lot. Stefano

LLehner commented 4 weeks ago

Hi @stemangiola, no we don't plan to port squidpy functionalities to R. I mean segmentation itself is not done with squidpy, maybe the authors of the segmentation packages would be up for it, but i don't really see a good reason to do that.