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scverse / squidpy

Spatial Single Cell Analysis in Python
https://squidpy.readthedocs.io/en/stable/
BSD 3-Clause "New" or "Revised" License
400 stars 70 forks source link

Maint/fix warnings #798

Closed michalk8 closed 4 months ago

michalk8 commented 4 months ago

IMPORTANT: Please search among the Pull requests before creating one.

Description

Fix warnings from tests.

How has this been tested?

N/A

Closes

N/A

codecov-commenter commented 4 months ago

Codecov Report

Attention: 9 lines in your changes are missing coverage. Please review.

Comparison is base (1db4aa8) 69.87% compared to head (cbd593d) 69.83%. Report is 2 commits behind head on main.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #798 +/- ## ========================================== - Coverage 69.87% 69.83% -0.05% ========================================== Files 39 39 Lines 5498 5497 -1 Branches 1031 1034 +3 ========================================== - Hits 3842 3839 -3 Misses 1363 1363 - Partials 293 295 +2 ``` | [Files](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse) | Coverage Δ | | |---|---|---| | [src/squidpy/gr/\_ligrec.py](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NxdWlkcHkvZ3IvX2xpZ3JlYy5weQ==) | `76.36% <100.00%> (ø)` | | | [src/squidpy/gr/\_utils.py](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NxdWlkcHkvZ3IvX3V0aWxzLnB5) | `60.11% <100.00%> (ø)` | | | [src/squidpy/pl/\_graph.py](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NxdWlkcHkvcGwvX2dyYXBoLnB5) | `79.20% <100.00%> (ø)` | | | [src/squidpy/pl/\_interactive/\_controller.py](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NxdWlkcHkvcGwvX2ludGVyYWN0aXZlL19jb250cm9sbGVyLnB5) | `11.11% <ø> (-0.55%)` | :arrow_down: | | [src/squidpy/pl/\_interactive/\_utils.py](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NxdWlkcHkvcGwvX2ludGVyYWN0aXZlL191dGlscy5weQ==) | `32.14% <ø> (-1.20%)` | :arrow_down: | | [src/squidpy/pl/\_ligrec.py](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NxdWlkcHkvcGwvX2xpZ3JlYy5weQ==) | `88.50% <100.00%> (ø)` | | | [src/squidpy/pl/\_var\_by\_distance.py](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NxdWlkcHkvcGwvX3Zhcl9ieV9kaXN0YW5jZS5weQ==) | `88.05% <100.00%> (ø)` | | | [src/squidpy/read/\_read.py](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NxdWlkcHkvcmVhZC9fcmVhZC5weQ==) | `35.86% <ø> (ø)` | | | [src/squidpy/im/\_container.py](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NxdWlkcHkvaW0vX2NvbnRhaW5lci5weQ==) | `85.42% <75.00%> (ø)` | | | [src/squidpy/pl/\_color\_utils.py](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse#diff-c3JjL3NxdWlkcHkvcGwvX2NvbG9yX3V0aWxzLnB5) | `82.05% <0.00%> (ø)` | | | ... and [4 more](https://app.codecov.io/gh/scverse/squidpy/pull/798?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=scverse) | |