Add function for calculating niches

scverse / squidpy

Spatial Single Cell Analysis in Python

https://squidpy.readthedocs.io/en/stable/

BSD 3-Clause "New" or "Revised" License

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Add function for calculating niches #831

Open LLehner opened 1 month ago

LLehner commented 1 month ago

Description

Adds a function that calculates niches using different strategies. The initial function calculates niches based on neighborhood profiles similar to here.

This PR will get updated with methods discussed in https://github.com/scverse/squidpy/issues/789.