And, here is the sturcture of 10x visium chip:
when I set the following n_rings=2 and n_neighs=6, I expect there should be more neighbours when n_rings=2 than n_rings=1, but I have set n_neighs=6, are the neighbours still the same between n_rings=1 and n_rings=2 ?
sq.gr.spatial_neighbors(adata, n_rings=2, coord_type="grid", n_neighs=6)
In visium, one spot and it's 6 neighbours have the same euclidean distance. In this case, what will happens if I set n_neighs=3 or n_neighs=10 ? Is it mandatory to set n_neighs=6 for 10x visium ?
Hi, what does the parameter mean when build spatial neighborhood graph (https://squidpy.readthedocs.io/en/stable/_modules/squidpy/gr/_build.html#spatial_neighbors)?
And, here is the sturcture of 10x visium chip:
when I set the following
n_rings=2andn_neighs=6, I expect there should be more neighbours when n_rings=2 than n_rings=1, but I have setn_neighs=6, are the neighbours still the same betweenn_rings=1andn_rings=2?sq.gr.spatial_neighbors(adata, n_rings=2, coord_type="grid", n_neighs=6)In visium, one spot and it's 6 neighbours have the same euclidean distance. In this case, what will happens if I set
n_neighs=3orn_neighs=10? Is it mandatory to setn_neighs=6for 10x visium ?