Open timtreis opened 2 months ago
Essentially tried following the Squidpy Xenium tutorial but using a spatialdata
object. Failed when I tried to color my plot by Leiden colors.
Essentially tried following the Squidpy Xenium tutorial but using a
spatialdata
object. Failed when I tried to color my plot by Leiden colors.
with this?
No, this one seems to basically just extract the adata
and then does normal things that were possible before. I think the goal should be to directly pass either the sdata.tables[...]
or sdata
and table_name
(if the latter cannot be inferred), wdyt? 🤔
No, this one seems to basically just extract the
adata
and then does normal things that were possible before. I think the goal should be to directly pass either thesdata.tables[...]
orsdata
andtable_name
(if the latter cannot be inferred), wdyt? 🤔
We did that initially, but to keep verbosity low, chose the adata approach.
Please just post/link functions here that do not work with
SpatialData
- we will then gradually port those over.