Open alanocallaghan opened 1 year ago
Not sure if the same file or not, but the link: https://github.com/scverse/squidpy_notebooks/blob/main/environment.yml resolves to 404. It is step 1 of certain tutorials, and the env should be present if you are recommending folks to install via that file.
I assumed this repo was dead given this never got addressed, but I see there are recent commits, issues, PRs etc. Truly bizarre to me, can't be hard to put together an environment yaml or just remove the link altogether
Per https://squidpy.readthedocs.io/en/stable/notebooks/tutorials/tutorial_visium_hne.html
Import packages & data[](https://squidpy.readthedocs.io/en/stable/notebooks/tutorials/tutorial_visium_hne.html#import-packages-data)
To run the notebook locally, create a conda environment as conda env create -f environment.yml using this environment.yml <https://github.com/scverse/squidpy_notebooks/blob/main/environment.yml>_.
¯\_(ツ)_/¯
I gave up and went with an ecosystem that'll let me run the docs without needing to faff with dependencies first :)