Open LucaMarconato opened 1 month ago
I'd suggest to make a PR for the first issue and then transfer the second task item in a new issue to address later on.
update: #125 merged. I understand we want to keep this open for the 5k tutorial as well?
Very nice! Yes, I'd keep this to track the usage on the 5k dataset; but also, as pointed out by 10x, it would be nice to plot/use the new multimodal segmentation.
CC @giovp @LLehner
The 10x team reviewed the Xenium notebook and found it very useful! (Btw, it's ready to merge https://github.com/scverse/squidpy_notebooks/pull/125).
They suggested to consider two improvements.
SpatialData
object, as shown here.