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scverse / squidpy_notebooks

Tutorials for Squidpy
https://squidpy.readthedocs.io/en/stable/
MIT License
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Img container example #42

Closed davidsebfischer closed 3 years ago

davidsebfischer commented 3 years ago

@hspitzer where did you put the instruction document for writing these notebooks again? Thanks!

hspitzer commented 3 years ago

have a look at #14 . Do you have a concrete question? Several images notebooks are already merged, you can also look at them. When writing examples for image container, please also consider that we're currently changing the api slightly (see https://github.com/theislab/squidpy/pull/239) so you might want to base you example on this branch which is almost read to merge and already works well.

giovp commented 3 years ago

@hspitzer either we merge this in #30 and fix them there, or can alsowait, don't necessary need to make the cut for the first release, same for me

hspitzer commented 3 years ago

thanks a lot @davidsebfischer for writing these examples! I will merge this in #30 with the general cleanup.

hspitzer commented 3 years ago

Will be merged in #30 . Thanks again!