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scverse / squidpy_notebooks

Tutorials for Squidpy
https://squidpy.readthedocs.io/en/stable/
MIT License
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scrna-sea and mFISH example #79

Closed FADHLyemen closed 3 years ago

FADHLyemen commented 3 years ago

Hi, Could you example with scrna-seq from 10x and image from same tissue?

giovp commented 3 years ago

hello! there are several examples regarding this settings you just mentioned: https://squidpy.readthedocs.io/en/latest/auto_tutorials/tutorial_visium_fluo.html https://squidpy.readthedocs.io/en/latest/auto_tutorials/tutorial_visium_hne.html

let me know if they are useful!

FADHLyemen commented 3 years ago

do have example not using Visium?

giovp commented 3 years ago

many, check tutorials and examples here: https://squidpy.readthedocs.io/en/latest/examples.html https://squidpy.readthedocs.io/en/latest/tutorials.html

giovp commented 3 years ago

hello @FADHLyemen was the sugested tutorials useful?

giovp commented 3 years ago

I'm gonna close this, feel free to reopen if not resolved