scverse / squidpy_notebooks

Tutorials for Squidpy
https://squidpy.readthedocs.io/en/stable/
MIT License
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alpha parameter in sq.pl.spatial_scatter #88

Closed jnmark closed 2 years ago

jnmark commented 2 years ago

I am trying to use the 'alpha' parameter in spatial_scatter, but regardless of what value I try between 0 and 1, the spot opacity doesn't seem to change. On the other hand 'img_alpha' works perfectly Am I doing something wrong?

sq.pl.spatial_scatter(adata, alpha = 0.1, color='texturefeatures_cluster_05')