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sdat2 / seager19

Replication of Seager et al. (2019) Nat. Clim. Chan. They used a simple-as-possible coupled model to explain the bias in the nino3.4 trend in climate models (CMIP5). This repository replicates/reproduces their work, shows that it also applies to CMIP6, and varies some of the parameters.
https://seager19.readthedocs.io/
MIT License
6 stars 0 forks source link

Problem with format of qflx.nc output from python #11

Closed sdat2 closed 3 years ago

sdat2 commented 3 years ago

Error message:

*** Error in `../SRC/tcom.exe': realloc(): invalid next size: 0x000000000f921340 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x7f474)[0x7fd9cbe19474]
/lib64/libc.so.6(+0x84861)[0x7fd9cbe1e861]
/lib64/libc.so.6(realloc+0x1d2)[0x7fd9cbe1fe12]
/lib64/libnetcdf.so.7(utf8proc_map+0x89)[0x7fd9ccea6d19]
/lib64/libnetcdf.so.7(utf8proc_NFC+0x23)[0x7fd9ccea6de3]
/lib64/libnetcdf.so.7(NC_findattr+0x31)[0x7fd9cceb8e81]
/lib64/libnetcdf.so.7(+0x6efc1)[0x7fd9cceb8fc1]
/lib64/libnetcdf.so.7(NC3_inq_att+0x24)[0x7fd9cceb91e4]
/lib64/libnetcdf.so.7(nc_inq_att+0x50)[0x7fd9cce9cc30]
/lib64/libnetcdf.so.7(ncattinq+0x2d)[0x7fd9cce9a34d]
/lib64/libnetcdff.so.5(ncainq_+0x7d)[0x7fd9ccbf192d]
../SRC/tcom.exe[0x4310e8]
../SRC/tcom.exe[0x419533]
../SRC/tcom.exe[0x419c88]
../SRC/tcom.exe[0x41f296]
../SRC/tcom.exe[0x404320]
../SRC/tcom.exe[0x4024cd]
/lib64/libc.so.6(__libc_start_main+0xf5)[0x7fd9cbdbc555]
../SRC/tcom.exe[0x40251c]
======= Memory map: ========
00400000-00441000 r-xp 00000000 00:28 37717646892077219                  /home/users/sithom/seager19/ocean/SRC/tcom.exe
00640000-00641000 r--p 00040000 00:28 37717646892077219                  /home/users/sithom/seager19/ocean/SRC/tcom.exe
00641000-00642000 rw-p 00041000 00:28 37717646892077219                  /home/users/sithom/seager19/ocean/SRC/tcom.exe
00642000-0e483000 rw-p 00000000 00:00 0 
0f905000-0f926000 rw-p 00000000 00:00 0                                  [heap]
7fd9bc000000-7fd9bc021000 rw-p 00000000 00:00 0 
7fd9bc021000-7fd9c0000000 ---p 00000000 00:00 0 
7fd9c23bf000-7fd9c6b77000 rw-p 00000000 00:00 0 
7fd9c6b77000-7fd9c6b79000 r-xp 00000000 08:03 1052292                    /usr/lib64/libfreebl3.so
7fd9c6b79000-7fd9c6d78000 ---p 00002000 08:03 1052292                    /usr/lib64/libfreebl3.so
7fd9c6d78000-7fd9c6d79000 r--p 00001000 08:03 1052292                    /usr/lib64/libfreebl3.so
7fd9c6d79000-7fd9c6d7a000 rw-p 00002000 08:03 1052292                    /usr/lib64/libfreebl3.so
7fd9c6d7a000-7fd9c6dda000 r-xp 00000000 08:03 1053022                    /usr/lib64/libpcre.so.1.2.0
7fd9c6dda000-7fd9c6fda000 ---p 00060000 08:03 1053022                    /usr/lib64/libpcre.so.1.2.0
7fd9c6fda000-7fd9c6fdb000 r--p 00060000 08:03 1053022                    /usr/lib64/libpcre.so.1.2.0
7fd9c6fdb000-7fd9c6fdc000 rw-p 00061000 08:03 1053022                    /usr/lib64/libpcre.so.1.2.0
7fd9c6fdc000-7fd9c6fe4000 r-xp 00000000 08:03 1052525                    /usr/lib64/libcrypt-2.17.so
7fd9c6fe4000-7fd9c71e3000 ---p 00008000 08:03 1052525                    /usr/lib64/libcrypt-2.17.so
7fd9c71e3000-7fd9c71e4000 r--p 00007000 08:03 1052525                    /usr/lib64/libcrypt-2.17.so
7fd9c71e4000-7fd9c71e5000 rw-p 00008000 08:03 1052525                    /usr/lib64/libcrypt-2.17.so
7fd9c71e5000-7fd9c7213000 rw-p 00000000 00:00 0 
7fd9c7213000-7fd9c7237000 r-xp 00000000 08:03 1053039                    /usr/lib64/libselinux.so.1
7fd9c7237000-7fd9c7436000 ---p 00024000 08:03 1053039                    /usr/lib64/libselinux.so.1
7fd9c7436000-7fd9c7437000 r--p 00023000 08:03 1053039                    /usr/lib64/libselinux.so.1
7fd9c7437000-7fd9c7438000 rw-p 00024000 08:03 1053039                    /usr/lib64/libselinux.so.1
7fd9c7438000-7fd9c743a000 rw-p 00000000 00:00 0 
7fd9c743a000-7fd9c7456000 r-xp 00000000 08:03 1056270                    /usr/lib64/libsasl2.so.3.0.0
7fd9c7456000-7fd9c7655000 ---p 0001c000 08:03 1056270                    /usr/lib64/libsasl2.so.3.0.0
7fd9c7655000-7fd9c7656000 r--p 0001b000 08:03 1056270                    /usr/lib64/libsasl2.so.3.0.0
7fd9c7656000-7fd9c7657000 rw-p 0001c000 08:03 1056270                    /usr/lib64/libsasl2.so.3.0.0
7fd9c7657000-7fd9c766d000 r-xp 00000000 08:03 1097451                    /usr/lib64/libresolv-2.17.so
7fd9c766d000-7fd9c786d000 ---p 00016000 08:03 1097451                    /usr/lib64/libresolv-2.17.so
7fd9c786d000-7fd9c786e000 r--p 00016000 08:03 1097451                    /usr/lib64/libresolv-2.17.so
7fd9c786e000-7fd9c786f000 rw-p 00017000 08:03 1097451                    /usr/lib64/libresolv-2.17.so
7fd9c786f000-7fd9c7871000 rw-p 00000000 00:00 0 
7fd9c7871000-7fd9c7874000 r-xp 00000000 08:03 1053201                    /usr/lib64/libkeyutils.so.1.5
7fd9c7874000-7fd9c7a73000 ---p 00003000 08:03 1053201                    /usr/lib64/libkeyutils.so.1.5
7fd9c7a73000-7fd9c7a74000 r--p 00002000 08:03 1053201                    /usr/lib64/libkeyutils.so.1.5
7fd9c7a74000-7fd9c7a75000 rw-p 00003000 08:03 1053201                    /usr/lib64/libkeyutils.so.1.5
7fd9c7a75000-7fd9c7a83000 r-xp 00000000 08:03 1097464                    /usr/lib64/libkrb5support.so.0.1
7fd9c7a83000-7fd9c7c83000 ---p 0000e000 08:03 1097464                    /usr/lib64/libkrb5support.so.0.1
7fd9c7c83000-7fd9c7c84000 r--p 0000e000 08:03 1097464                    /usr/lib64/libkrb5support.so.0.1
7fd9c7c84000-7fd9c7c85000 rw-p 0000f000 08:03 1097464                    /usr/lib64/libkrb5support.so.0.1
7fd9c7c85000-7fd9c7c8c000 r-xp 00000000 08:03 1097452                    /usr/lib64/librt-2.17.so
7fd9c7c8c000-7fd9c7e8b000 ---p 00007000 08:03 1097452                    /usr/lib64/librt-2.17.so
7fd9c7e8b000-7fd9c7e8c000 r--p 00006000 08:03 1097452                    /usr/lib64/librt-2.17.so
7fd9c7e8c000-7fd9c7e8d000 rw-p 00007000 08:03 1097452                    /usr/lib64/librt-2.17.so
7fd9c7e8d000-7fd9c80c3000 r-xp 00000000 08:03 1053267                    /usr/lib64/libcrypto.so.1.0.2k
7fd9c80c3000-7fd9c82c3000 ---p 00236000 08:03 1053267                    /usr/lib64/libcrypto.so.1.0.2k
7fd9c82c3000-7fd9c82df000 r--p 00236000 08:03 1053267                    /usr/lib64/libcrypto.so.1.0.2k
7fd9c82df000-7fd9c82ec000 rw-p 00252000 08:03 1053267                    /usr/lib64/libcrypto.so.1.0.2k
7fd9c82ec000-7fd9c82f0000 rw-p 00000000 00:00 0 
7fd9c82f0000-7fd9c8357000 r-xp 00000000 08:03 1063984                    /usr/lib64/libssl.so.1.0.2k
7fd9c8357000-7fd9c8557000 ---p 00067000 08:03 1063984                    /usr/lib64/libssl.so.1.0.2k
7fd9c8557000-7fd9c855b000 r--p 00067000 08:03 1063984                    /usr/lib64/libssl.so.1.0.2k
7fd9c855b000-7fd9c8562000 rw-p 0006b000 08:03 1063984                    /usr/lib64/libssl.so.1.0.2k
7fd9c8562000-7fd9c8569000 r-xp 00000000 08:03 1075878                    /usr/lib64/libaec.so.0.0.10
7fd9c8569000-7fd9c8768000 ---p 00007000 08:03 1075878                    /usr/lib64/libaec.so.0.0.10
7fd9c8768000-7fd9c8769000 r--p 00006000 08:03 1075878                    /usr/lib64/libaec.so.0.0.10
7fd9c8769000-7fd9c876a000 rw-p 00007000 08:03 1075878                    /usr/lib64/libaec.so.0.0.10
Program received signal SIGABRT: Process abort signal.

Backtrace for this error:
#0  0x7FD9CC8D56D7
#1  0x7FD9CC8D5D1E
#2  0x7FD9CBDD044F
#3  0x7FD9CBDD03D7
#4  0x7FD9CBDD1AC7
#5  0x7FD9CBE12F66
#6  0x7FD9CBE19473
#7  0x7FD9CBE1E860
#8  0x7FD9CBE1FE11
#9  0x7FD9CCEA6D18
#10  0x7FD9CCEA6DE2
#11  0x7FD9CCEB8E80
#12  0x7FD9CCEB8FC0
#13  0x7FD9CCEB91E3
#14  0x7FD9CCE9CC2F
#15  0x7FD9CCE9A34C
#16  0x7FD9CCBF192C
#17  0x4310E7 in odb_ifatt_
#18  0x419532 in grids_equiv_
#19  0x419C87 in data_on_model_grid_.part.1 at om_forc.F:?
#20  0x41F295 in qflux_init_
#21  0x40431F in MAIN__ at om_main.F:?
./run-model.sh: line 80: 20041 Aborted                 ../SRC/tcom.exe -i om_run2f -t month.tios
sdat2 commented 3 years ago

Ingrid Ingrid, by M. Benno Blumenthal benno@ldeo.columbia.edu, is designed to manipulate large datasets and model input/output. It can read data from its data catalog, a netCDF file, or a directly attached model, and output the data, either by feeding it to a model, creating a netCDF file, or creating plots and other representations of the data.

Ingrid has a number of filters which allow simple data manipulations, such as adding two datasets together, smoothing, averaging, and regridding to a new coordinate. In addition to netCDF, it also reads HDF, CDF, VOGL, and SGI GL.

Ingrid is currently running as a WWW daemon that can be accessed through http://rainbow.ldgo.columbia.edu/datacatalog.html to see some of its capabilities on a climate data catalog maintained by the Climate Group of the Lamont-Doherty Earth Observatory of Columbia University. To quote the introduction:

The Data Catalog is both a catalog and a library of datasets, i.e. it both helps you figure out which data you want, and helps you work with the data. The interface allows you to make plots, tables, and files from any dataset, its subsets, or processed versions thereof. This data server is designed to make data accessible to people using WWW clients (viewers) and to serve as a data resource for WWW documents. Since most documents cannot use raw data, the server is able to deliver the data in a variety of ways: as data files (netCDF and HDF), as tables (html), and in a variety of plots (line, contour, color, vector) and plot formats (PostScript and gif). Processing of the data, particularly averaging, can be requested as well.

The Data Viewer in particular demonstrates the power of the Ingrid daemon.

Ingrid currently runs on Linux, for which binaries are available. CVS access to the current source can be arranged.

sdat2 commented 3 years ago

http://xarray.pydata.org/en/stable/generated/xarray.core.rolling.DataArrayCoarsen.html#xarray.core.rolling.DataArrayCoarsen

sdat2 commented 3 years ago

fixed; probably a problem with encodings.