sdparekh / zUMIs

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
GNU General Public License v3.0
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Syntax error loading yaml file #288

Closed xuwanxing closed 2 years ago

xuwanxing commented 2 years ago

I used sample HEK293T in Smart-seq3 pipeline to run zUMIs and got an error: Error: Syntax error loading yaml file Execution halted YAML file has an error. Look at the zUMIs_YAMLerror.log or contact developers. Here is my yaml file: https://github.com/xuwanxing/Scripts/blob/main/HEK.yaml I noticed some solutions (as below), but they didn't work for me.
https://github.com/sdparekh/zUMIs/issues/241 https://github.com/sdparekh/zUMIs/issues/232 https://github.com/sandberg-lab/Smart-seq3/issues/2 Can anybody help me? Thanks.