sdparekh / zUMIs

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
GNU General Public License v3.0
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"43 barcodes detected" in test data" #308

Closed parichitran closed 2 years ago

parichitran commented 2 years ago

Describe the bug Greetings I ran the test data set everything is fine except this lesser barcode when comparing to "78 barcodes detected" in the example data set I followed same parameters in yaml file as same as the example yaml

Also this variations in barcode makes lot of differences though its done same data

I am here attaching my yaml file and the log data yaml.txt logfile.txt Additonal file:my testbarcode file(43)and inbuilt example testbarcode (78) testkept_barcodes.txt Examplekept_barcodes.txt

Thanks in advance

cziegenhain commented 2 years ago

Hey,

Nothing to worry about - the uploaded example data runthrough is quite old and the automatic detection may have changed since then.

From your log it looks like there was no errors, so you can proceed with analysing your own data!

best, Christoph