zUMIs-env no longer in download from GitHub

[katharinebca]

We started working with zUMIs a couple of weeks ago. Several people downloaded the miniconda version from github---started using it with no problem. We start with demultiplexed fastq files so we needed the zUMIs-env directory to change environments to merge our fastq files.

All working great--thank you for a great tool.

However, today several lab members tried to set it up and the download no longer automatically generates the zUMIs-env directory? Did something change?

We are puzzled.

Thanks, *

[cziegenhain]

Hi,

Thanks for downloading zUMIs! The zUMIs-env is packed up for saving space on GitHub, and unpacks during the first run of zUMIs.sh.

You can also unpack yourself after cloning from GitHub: cat zUMIs-miniconda.parta* > zUMIs-miniconda.tar.bz2 tar -xj --overwrite -f zUMIs-miniconda.tar.bz2 -C zUMIs-env

Best, Christoph

[katharinebca]

Thanks Christoph….very helpful.

Since we merge fastq files we were looking for the environment before running it the first time!

Kate

Katharine Abruzzi, PhD HHMI; Brandeis University Rosbash Lab 415 South ST. Waltham, MA 02454

Fedex #: 1530-1071-4 @.*** 781-736-3161

On Oct 24, 2022, at 3:23 PM, cziegenhain @.***> wrote:

Hi,

Thanks for downloading zUMIs! The zUMIs-env is packed up for saving space on GitHub, and unpacks during the first run of zUMIs.sh.

You can also unpack yourself after cloning from GitHub: cat zUMIs-miniconda.parta* > zUMIs-miniconda.tar.bz2 tar -xj --overwrite -f zUMIs-miniconda.tar.bz2 -C zUMIs-env

Best, Christoph

— Reply to this email directly, view it on GitHub https://github.com/sdparekh/zUMIs/issues/335#issuecomment-1289490450, or unsubscribe https://github.com/notifications/unsubscribe-auth/AHMTV2Y5HH3D63Q5J2XZKEDWE3O27ANCNFSM6AAAAAARNIRBJY. You are receiving this because you authored the thread.

[cziegenhain]

Let me know if you need anything else!