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sdparekh / zUMIs

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
GNU General Public License v3.0
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STAR version error #339

Closed royfrancis closed 1 year ago

royfrancis commented 1 year ago

I am running on an HPC. I have created my STAR index using STAR 2.7.9a. And I have specified this index and the same genome and gtf in the yaml config. STAR is loaded into environment using module load star/2.7.9a before running the zumis script. But, I get this warning and it fails further down.

WARNING: The STAR version used for mapping is 2.7.9a and the STAR index was created using the version 2.7.4a.

Where is 2.7.4a coming from? I don't even have this version installed. Is there a version of STAR used inside zUMIS?

cziegenhain commented 1 year ago

Hi Roy,

I think that warning is OK, I have frequently seen that the version number STAR saves into the genome index is not always up to date with the actual STAR version you have used.

If you want me to have a look at any downstream errors, please provide the full YAML file and the full verbose of the run. Best, Christoph