sdparekh / zUMIs

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
GNU General Public License v3.0
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Example of dual index Smart-seq3 #367

Closed russellxie closed 1 year ago

russellxie commented 1 year ago

Hello,

Is it possible to share an example of how to set up the barcode white list for the dual index smart-seq3 libraries? The manual only has the example of single i7 indexed libraries.

Best, -Russell

cziegenhain commented 1 year ago

Hi,

when using dual index barcodes (example for YAML attached), , the expected barcodelist should contain the concatenated string of all possible expected barcode combinations!

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russellxie commented 1 year ago

Cool, thanks!