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sdparekh / zUMIs

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
GNU General Public License v3.0
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How to only demultiplex raw reads (not mapped reads) using zUMIs #374

Open ytang0831 opened 9 months ago

ytang0831 commented 9 months ago

Hi~ zUMIs is very flexible in demultiplexing cells. But now i can only get the demultiplexed mapped bam file. How can i get the demultiplexed raw reads? Best,

cziegenhain commented 9 months ago

Hi, this features is not available in zUMIs.

ytang0831 commented 9 months ago

Hi, this features is not available in zUMIs.

Can you add this feature in the next version?

cziegenhain commented 9 months ago

Unfortunately I dont think there will be any such updates in the foreseeable future.