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sdrogers / mfgcf

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Put LDA output into the system. #9

Open joewandy opened 6 years ago

joewandy commented 6 years ago

Perhaps find a way to super-impose MS2LDA and Molecular Networking output together?

justinjjvanderhooft commented 6 years ago

With Madeleine Ernst and Simon, we have been playing with this. The current workflow that is applied to a few data sets is as follows: download the summary csv from www.ms2lda.org and match that to the nodes of the molecular network. Doing so, we can map and visualise (in CytoScape) the presence/absence of mass2motifs within molecular families. An important condition to be able to do so is that identifiers do match between the Molecular Networking and MS2LDA experiment, i.e., for example started from the same (mgf) file.