Fix docker push CI - Githubissues

sdsc-ordes / gimie

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https://sdsc-ordes.github.io/gimie/

Apache License 2.0

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Fix docker push CI #74

Closed cmdoret closed 10 months ago

cmdoret commented 10 months ago

the docker build and push CI workflow fails with:

#24 2.746 OSError: libgomp.so.1: cannot open shared object file: No such file or directory

Objective: Fix CI

Requirements:

[x] Investigate issue in logs
[x] Update Dockerfile as required
[ ] Trigger image push

supermaxiste commented 10 months ago

Source of the issue from here. For the last point, I can't trigger the push myself.

supermaxiste commented 10 months ago

Looks like there's an OS incompatibility issue:

Unable to find installation candidates for typecode-libmagic (5.39.210531)

Next steps:

[x] Check alternative options to keep arm64 architecture
[x] If yes to point above: consider if it's worth the effort
[ ] If no, discuss dropping the architecture or the dependency

cmdoret commented 10 months ago

Insights so far:

scancode-toolkit ships with typecode-libmagic, a binary python package with an optimized libmagic. It is fast, but not arm64-compatible
scancode-toolkit-mini does not ship typecode-libmagic and can use the system's libmagic. It works on any platform, but is very slow

EDIT: both versions might actually be equally slow

supermaxiste commented 10 months ago

Shall we can keep the toolkit as is and fix the docker push for this issue? For optimizing the scancode-toolkit we can open a separate issue, what do you think?

cmdoret commented 10 months ago

Agreed, optimizing would likely be replacing: for which there is now this issue: https://github.com/SDSC-ORD/gimie/issues/89