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sdsc-ordes / modos-api

Python API to manage multi-omics digital objects
https://sdsc-ordes.github.io/modos-api
Apache License 2.0
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feat(cli): add stream command to cli #84

Closed almutlue closed 4 months ago

almutlue commented 4 months ago

Goal

Add a new command modos stream to modos cli

Context

Streaming from python is hard due to pysam's limited capabilities to work on byte streams. In the meantime we can still implement streaming via cli by direct parsing the bytestream from the htsget client to stdout.

almutlue commented 4 months ago

Duplicate with #86