Restructures how scripts are constructed, tested, and called. This also propagates the use of MaNGADataCube into the main execution of the DAP. Tests successful.
The full list of changes are:
Moved all core script code from bin to mangadap/scripts. Code in bin now make simple calls to these scripts. Moved rundap.py from mangadap.survey to mangadap.scripts.
General clean-up of the executables in bin.
Integrated use of MaNGADataCube instead of DRPFits when executing the pipeline. Usage of DRPFits is now largely obsolete. Not removed yet. Interface is still not abstracted enough for a general DataCube (because of naming conventions), but getting there.
Tests now include a nominal run of manga_dap using the ALL binning scheme.
Usage of ObsInputPar is now obsolete.
Spectral resolution is no longer chosen by the spectral binning module; instead the spectral resolution is selected when reading the datacube (makes much more sense!). Led to some clean-up of the binning config files.
To select different spectral resolution extensions, use command-line arguments in rundap or write_dap_config.
Started doc edits.
Example scripts now use MaNGADataCube instead of DRPFits, but further clean-up of the examples directory is needed.
Include a default analysis plan, so that executions of manga_dap don't require a yanny parameter file with the analysis plan.
Docstring updates for modules up through StellarContinuumModel, but still lots to do.
Restructures how scripts are constructed, tested, and called. This also propagates the use of
MaNGADataCubeinto the main execution of the DAP. Tests successful.The full list of changes are:
bintomangadap/scripts. Code inbinnow make simple calls to these scripts. Movedrundap.pyfrommangadap.surveytomangadap.scripts.bin.MaNGADataCubeinstead ofDRPFitswhen executing the pipeline. Usage ofDRPFitsis now largely obsolete. Not removed yet. Interface is still not abstracted enough for a generalDataCube(because of naming conventions), but getting there.manga_dapusing theALLbinning scheme.ObsInputParis now obsolete.rundaporwrite_dap_config.MaNGADataCubeinstead ofDRPFits, but further clean-up of theexamplesdirectory is needed.manga_dapdon't require a yanny parameter file with the analysis plan.StellarContinuumModel, but still lots to do.