search

sdtemple / isweep

Statistical inference of recent positive selection using IBD segments
https://github.com/sdtemple/isweep
Creative Commons Zero v1.0 Universal
4 stars 0 forks source link

Genetic maps w/ ' ' or '\t' spacing #2

Closed sdtemple closed 3 months ago

sdtemple commented 4 months ago

The current script file ibd-windowed.py assumes that the genetic map is tab-separated. Fortunately, this is at the end of the Snakefile-scan.smk directives, so, until I fix this, it is possible to follow the remaining rules in scan.smk and interesting.smk by running python in the terminal.

sdtemple commented 3 months ago

The genetic map could have any arbitrary whitespace or comma spacing. I will not provide a fix for this. The user should in pre-processing adjust their genetic map files to have tab-separated spacing.