Closed sdtemple closed 3 months ago
You should adjust the first column, the chromosome number, in the genetic map to reflect the VCF #CHROM column. To see what the #CHROM is:
#CHROM
bcftools query -f "%CHROM\n" [your-vcf-file] | head
You should change the genetic map, not the vcf! The VCF may be larger and take longer to edit.
You should adjust the first column, the chromosome number, in the genetic map to reflect the VCF
#CHROM
column. To see what the#CHROM
is:bcftools query -f "%CHROM\n" [your-vcf-file] | head
You should change the genetic map, not the vcf! The VCF may be larger and take longer to edit.