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seacode / gmacs

A generic size-structured stock assessment model
https://seacode.github.io/gmacs
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Create R function to read in echo'ed fixed pars #164

Open quantifish opened 8 years ago

quantifish commented 8 years ago

x$names[i] [1] "m_dev" "m_dev"

x$est[i] [1] 1.8054 -1.8054 x$std[i] [1] 0.10746 0.10746 [10:13:30 AM] Jim Ianelli: hmm [10:13:45 AM] Darcy: So could just report the dev instead of M1998 itself? [10:14:16 AM] Jim Ianelli: ya, workout offset [10:15:04 AM] Darcy: yah could do, but not easy to code as dont have acess to mean M [10:16:48 AM] Jim Ianelli: oh…guess input M doesn’t show up on R side... [10:17:01 AM] Darcy: nah doesnt, well not yet [10:17:55 AM] Jim Ianelli: i echo the input ctl and dat file in the same form as the rep file [10:18:18 AM] Jim Ianelli: i.e. simple name w/o spaces then the array (or scalar) [10:18:37 AM] Jim Ianelli: so one line of R should read input easily

[10:20:43 AM] Jim Ianelli: something like: gmdat <- read_admb('gmacs_in.dat') [10:20:57 AM] Jim Ianelli: but maybe default for .rep needs an arg