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seaflow-uw / popcycle

Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow
https://seaflow.netlify.com
MIT License
9 stars 8 forks source link

No setup.py provided in popcycle #66

Open nahlgren opened 2 months ago

nahlgren commented 2 months ago

I was following the installation directions on the wiki (https://github.com/seaflow-uw/popcycle/wiki/SeaFlow-data-analysis-tutorial), but no python setup.py file is provided in the seaflowpy repo.

ctberthiaume commented 2 months ago

That wiki is really out of date. We should fix that. The current way to install popcycle is use the setup.R in the root of this repo, e.g. Rscript setup.R. Or you can build the docker image and use that, build-docker.sh. The container is based on a bioconductor image, so the documentation here should be enough to get it running. Right now it uses bioconductor release 3.15 but you could change that to 3.19 and it should work ok.