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seandavi / GEOquery

The bridge between the NCBI Gene Expression Omnibus and Bioconductor
http://seandavi.github.io/GEOquery/
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An error is reported when using getGEO to download data. #107

Closed 1298894527 closed 3 years ago

1298894527 commented 3 years ago

gset<-getGEO('GSE60502', destdir=".",getGPL = F) Found 1 file(s) GSE60502_series_matrix.txt.gz Using locally cached version: ./GSE60502_series_matrix.txt.gz error: 'C:\Users\star\AppData\Local\Temp\Rtmp4MLEYN\file22901f201c9' does not exist.

seandavi commented 3 years ago

I'm not able to reproduce your error. I'd suggest restarting R and trying again. It is possible that the R temp directory was deleted or some other filesystem problem occurred. If you still have problems after restarting R and ensuring that you are using the most recent version of R and GEOquery, it would be helpful to have the output of sessionInfo() when the error occurs.

I'm going to close for now, but feel free to reopen if you still have problems.

1298894527 commented 3 years ago

Thanks for your reply, I have found my problem and solved it.

Thank you again for your enthusiasm.Happy New Year！

------------------ 原始邮件 ------------------ 发件人: "Sean Davis"<notifications@github.com>; 发送时间: 2021年1月2日(星期六) 上午9:35 收件人: "seandavi/GEOquery"<GEOquery@noreply.github.com>; 抄送: "尽吹散"<1298894527@qq.com>; "Author"<author@noreply.github.com>; 主题: Re: [seandavi/GEOquery] An error is reported when using getGEO to download data. (#107)

I'm not able to reproduce your error. I'd suggest restarting R and trying again. It is possible that the R temp directory was deleted or some other filesystem problem occurred. If you still have problems after restarting R and ensuring that you are using the most recent version of R and GEOquery, it would be helpful to have the output of sessionInfo() when the error occurs.

I'm going to close for now, but feel free to reopen if you still have problems.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

kktt520 commented 3 years ago

could you please tell me how to solve this problem? I had a same error as you

1298894527 commented 3 years ago

I don't know why you have this problem. The reason for this problem is that the user name of Microsoft login is Chinese, and the automatically generated file contains Chinese, so an error is reported. If you also have this problem, you may need to consider changing the login user name to English.

kktt520 commented 3 years ago

thanks!!! That really helps.