help with getGEO

[rominaappierdo]

Hi and thank you for your very useful package.

I'm trying to download multiple GSM or GSE record, hence I'm using getGEO function in a loop. example

for each gse in a list_of_gse:
     var = getGEO(gse)
     ..........etc

however, occasionally some record cannot be downloaded. This results in one of two situation:

• the whole execution stops
• the loop continues but the output miss that specific record information

Once I got an error like:

Error in the HTTP2 framing layerFile stored at:
/tmp/RtmpmogEWR/GSM5802517.soft
Error in downloadFile(myurl, destfile, mode) : 
  Failed to download /tmp/RtmpmogEWR/GSM5802517.soft!
Called: get_metadata -> getGEO -> getGEOfile -> downloadFile
Execution stopped

I would like to know if there was a way to check at each iteration if the download have been successful and, if not, try again in downloading the file.

Thank you in advance!

edit: I also just got this error

Timeout was reached: [] Operation timed out after 120000 milliseconds with 47824896 out of 156738322 bytes receivedFile stored at:
/tmp/Rtmp7I7FTO/GSE86434.soft.gz
Error in downloadFile(myurl, destfile, mode) : 
  Failed to download /tmp/Rtmp7I7FTO/GSE86434.soft.gz!
Called: getGEO -> getGEOfile -> downloadFile
Execution stopped