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seandavi / GEOquery

The bridge between the NCBI Gene Expression Omnibus and Bioconductor
http://seandavi.github.io/GEOquery/
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GEOquery not respecting timeout option #147

Open seandavi opened 1 year ago

seandavi commented 1 year ago

in spite of increasing timeout with options(timeout=3000), downloadFile keeps using 120 seconds. Am I doing something wrong?

I've installed the latest version using install_github('seandavi/GEOquery') and R version 4.3.1 (2023-06-16).

Originally posted by @jacorvar in https://github.com/seandavi/GEOquery/issues/139#issuecomment-1786048694

phonegor95 commented 1 year ago

I think the install_github('seandavi/GEOquery') not the latest version. I use this code and have no timeout error.

remotes::install_github("seandavi/GEOquery@58225fa")
library(GEOquery)
options(timeout=999999)