Cannot open URL - Githubissues

seandavi / GEOquery

The bridge between the NCBI Gene Expression Omnibus and Bioconductor

http://seandavi.github.io/GEOquery/

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Cannot open URL #33

Closed fgoebels closed 8 years ago

fgoebels commented 8 years ago

getGEO("GPL13112") Error in download.file(myurl, destfile, mode = mode, quiet = TRUE, method = getOption("download.file.method.GEOquery")) : cannot open URL 'http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?targ=self&acc=GPL13112&form=text&view=full'

seandavi commented 8 years ago

I guess you figured out that this is an issue with NCBI having switched over to using HTTPS only. An upgrade to GEOquery hopefully fixed your problem. Let me know if that isn't the case, @fgoebels.

fgoebels commented 8 years ago

I figured it out after some time. First I tried to change to https by myself, only to realize that I should just update. Thanks for the quick response.

Thanks, Florian

seandavi commented 8 years ago

Where should I post this so that folks will find it? Any suggestions?