Open kalugny opened 6 years ago
E.g.: $ GEOquery::getGEO('GSE23397', parseCharacteristics = FALSE)
$ GEOquery::getGEO('GSE23397', parseCharacteristics = FALSE)
Traceback: 1. GEOquery::getGEO("GSE23397", parseCharacteristics = FALSE) 2. getAndParseGSEMatrices(GEO, destdir, AnnotGPL = AnnotGPL, getGPL = getGPL, . parseCharacteristics = parseCharacteristics) 3. parseGSEMatrix(destfile, destdir = destdir, AnnotGPL = AnnotGPL, . getGPL = getGPL) 4. dplyr::mutate(pd, characteristics = ifelse(grepl("_ch2", characteristics), . "ch2", "ch1")) %>% tidyr::separate(kvpair, into = c("k", . "v"), sep = ":", fill = "right") %>% dplyr::mutate(k = paste(k, . characteristics, sep = ":")) %>% dplyr::select(-characteristics) %>% . tidyr::spread(k, v) 5. withVisible(eval(quote(`_fseq`(`_lhs`)), env, env)) 6. eval(quote(`_fseq`(`_lhs`)), env, env) 7. eval(quote(`_fseq`(`_lhs`)), env, env) 8. `_fseq`(`_lhs`) 9. freduce(value, `_function_list`) 10. withVisible(function_list[[k]](value)) 11. function_list[[k]](value) 12. tidyr::spread(., k, v) 13. spread.data.frame(., k, v) 14. abort(glue("Duplicate identifiers for rows {rows}"))```
E.g.:
$ GEOquery::getGEO('GSE23397', parseCharacteristics = FALSE)