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seandavi / GEOquery

The bridge between the NCBI Gene Expression Omnibus and Bioconductor
http://seandavi.github.io/GEOquery/
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Converting GSE to an ExpressionSet #84

Open JanLanzer opened 5 years ago

JanLanzer commented 5 years ago

Hi, when converting GSE to an ExpressionSet, you suggest in your help package to :

probesets <- Table(GPLList(gse)[[1]])$ID

The probeset is used in the next steo to match the ID of the values while creating a data matrix, that can be transformed into ExpressionSet.

I think the code should rather be: probesets <- Table(GSMList(gse)[[1]])$ID