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seandavi / MicroBioMap

https://seandavi.github.io/MicroBioMap/
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Sample region has both "unknown" and "missing." #4

Closed seandavi closed 1 year ago

seandavi commented 1 year ago 
> table(colData(cpd)$region)

                                            Australia/New Zealand 
                           12880                             3916 
       Central and Southern Asia   Eastern and South-Eastern Asia 
                            5602                            18461 
     Europe and Northern America  Latin America and the Caribbean 
                          103564                             1215 
Northern Africa and Western Asia                          Oceania 
                            1557                                4 
              Sub-Saharan Africa                          unknown 
                            5953                            15312
seandavi commented 1 year ago

Same with country: 

## 
## United States       unknown                       China       Denmark 
##         59994         15312         12880         10235          5980 
##         Japan 
##          5575
seandavi commented 1 year ago

Just tagging @rabdill

rabdill commented 1 year ago

This should be fixed in the latest version of the dataset—the "iso" and "region" columns now consistently show "unknown" without any "" values. https://zenodo.org/record/8226567